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    Identification of Plasmatic Biomarkers of Foie Gras Qualities in Duck by Metabolomics

    Zohre Mozduri, Nathalie Marty-Gasset, Bara Lo, Ali Akbar Masoudi, Mireille Morisson, C?cile Canlet, Julien Arroyo, Agn?s Bonnet, C?cile Bonnefont
    Journal PaperFrontiers in physiology , Volume 12 , 2021 February 12, {Pages 2 }

    Abstract

    The foie gras is an emblematic product of French gastronomy composed of waterfowl fatty liver. The organoleptic qualities of this product depend on the liver characteristics such as liver weight (LW) and technological yield (TY) at cooking. One of the main issues for producers is to classify the foie gras with high or low technological quality before cooking them. Thus the study aims at identifying biomarkers of these characteristics with non-invasive biomarkers in duck. 1H-NMR (nuclear magnetic resonance of the proton) analyses were performed on plasma of male mule ducks at different time points during the overfeeding period to obtain a large range of liver characteristics so as to identify plasmatic biomarkers of foie gras. We used two me

    A Genome-Wide Association Study of Survival to Unexpected Acute Heat Stress in a F2 Chicken Population

    H Asadullahi, R Vaez Torshizi, A Ehsani, A Masoudi
    Journal PaperJournal of Agricultural Science and Technology , Volume 23 , Issue 2, 2021 February 1, {Pages 283-292 }

    Abstract

    Heat stress, or hyperthermia, can have a serious effect on chicken performance in poultry industry in many parts of the world. Both genetics and environment play key role in the performance of a chicken and, therefore, it is important to consider both factors in addressing heat stress. On genetics level, genome-wide association studies have become a popular method for studying heat stress in recent years. A population of 202 F2 chickens was reared for 84 days to find genes and genomic regions affecting growth traits and immune system. But, due to unexpected acute increase in temperature at day 83, 182 birds died (case) and 20 birds remained alive (control). At the age of 70 days, blood sample of all birds was collected to extract their DNA,

    Bayes factors revealed selection signature for time to market body weight in chicken: a genome-wide association study using BayesCpi methodology

    Z Asgari, A Ehsani, AA Masoudi, R Vaez Torshizi
    Journal Paper , , {Pages }

    Abstract

    Application of Metabolomics to Identify Hepatic Biomarkers of Foie Gras Qualities in Duck

    Z Mozduri, B Lo, N Marty-Gasset, AA Masoudi, J Arroyo, M Morisson, ...
    Journal Paper , , {Pages }

    Abstract

    Application of Efficient Express Sequence Tags Information for Classification and Functional Study of Simple Sequence Repeats in Cattle Testis Tissue

    M Manavipour, A Ehsani, AA Masoudi
    Journal PaperTropical Animal Science Journal , Volume 43 , Issue 1, 2020 February 26, {Pages 25-34 }

    Abstract

    Genomic markers play an important role in tracing the flow of genetic causality of observable signals in animals and plants. In farm animals, the participation of male animals in the gene pool of subsequent generations are much higher than female animals and testes are the most important organs of the male reproductive system. This study was conducted to investigate simple sequence repeats (SSR) within the expressed sequence tags (ESTs) in order to classify the Bos taurus testis tissue’s genes for their relationship and specificity with related reproductive domains. A total of 48,549 publicly available EST sequences from cattle testis tissue downloaded from GenBank database, out of which, 10,237 sequences that their library made from test

    Genome‐wide association study of shank length and diameter at different developmental stages in chicken F2 resource population

    H Emrani, AA Masoudi, R Vaez Torshizi, A Ehsani
    Journal PaperAnimal Genetics , Volume 51 , Issue 5, 2020 October , {Pages 722-730 }

    Abstract

    In order to find SNPs and genes affecting shank traits, we performed a GWAS in a chicken F2 population of eight half‐sib families from five hatches derived from reciprocal crosses between an Arian fast‐growing line and an Urmia indigenous slow‐growing chicken. A total of 308 birds were genotyped using a 60K chicken SNP chip. Shank traits including shank length and diameter were measured weekly from birth to 12?weeks of age. A generalized linear model and a compressed mixed linear model (CMLM) were applied to achieve the significant regions. The value of the average genomic inflation factor (λ statistic) of the CMLM model (0.99) indicated that the CMLM was more effective than the generalized linear model in controlling the population

    Efficacy of Saussurea costus (Qost) Oil as an Iranian Traditional Medicine Product on Primary Dysmenorrhea: Case Series

    Nematollah Masoudi, Zahra Niktabe, Malihe Tabarrai, Fatemeh Nejatbakhsh, Ali Masoudi
    Journal PaperTraditional and Integrative Medicine , 2020 September 27, {Pages }

    Abstract

    Dysmenorrhea is known as painful menstruation with considerable effects on women's mental status and quality of life with some limits for treatment. The objective of this prospective case series was to evaluate effects of Saussurea Costus (Qost) oil, an Iranian Traditional Medicine (Persian Medicine) product, on the primary dysmenorrhea. In this case series, 13 patients were included to study and treated with local Qost oil for 6 weeks. The oil was rubbed (without massage) 15 drops every 12 hours to the sub-navel region until pubis. The improvement of dysmenorrhea, evaluated with VAS score based on the last periodic cycle before the study and the last cycle after the completion of the intervention, which continued 6 weeks (at least one peri

    Comparison of Anatomical and Blood Biochemical Parameters of Iranian Racing and Dual-Purpose Camels (Camelus dromedarius)

    Gholamreza Hajinejad-Bamroud, Ali Maghsoudi, Mohammad Rokouei, Mehdi Jahantigh, Ali Masoudi
    Journal PaperIranian Journal of Veterinary Medicine , Volume 14 , Issue 3, 2020 September 1, {Pages 289-302 }

    Abstract

    BACKGROUND: Animal breeds are often recognized through their specific characteristics, nevertheless, the breeds' anatomical and biochemical characteristics have not considered yet in many of the researches done on one-humped camels. There are some particular differences in camel breeds due to different climate conditions and rearing necessity. OBJECTIVES: The aim of the current study was to compare differences in anatomical and plasma biochem- ical parameters of two Iranian one-humped camels, the Jammaz (racing) and Balouchi (dual-purpose) breeds. METHODS: Anatomical parameters were body length (BL), neck length (NL), chest girth (CG), barrel girth (BG), hump circumference (HC), fore limb length (FLL), hind limb length (HLL), height at hump

    Analysis of ovarian tissue transcriptome profile in Shal ewes using RNA-Seq data

    Parvin Shariati Gazgazareh, ALI AKBAR MASOUDI, Rasoul Vaez Torshizi, Alireza Ehsani, Zaynab Mousavian
    Journal PaperAnimal Production , Volume 22 , Issue 2, 2020 June 21, {Pages 199-209 }

    Abstract

    The aim of this study was the investigation of gene expression profile in Shal sheep ovarian tissue using RNA sequencing data. For this?purpose, the ovaries of five Shal sheep were isolated after estrous synchronization and their RNA was sequenced using Illumina Hiseq 4000?technology. On average, the data obtained from the sequencing consisted of 26638311 read pairs with 81.08 unique mapping rate. The results?of bioinformatic analyzes revealed the expression of 21085 genes in Shal sheep ovarian tissue, of which 15078 genes had expression mean?above 10. Gene ontology analysis revealed the significant enrichment of 162 GO terms including 41 biological processes, 46 molecular?functions and 75 cellular components. KEGG pathway analysis also ide

    Investigating population structure and genetic diversity of some Iranian native cattle breeds using single nucleotide polymorphism markers

    Z Jafari, AA Masoudi, HM Shahrbabak
    Journal Paper , , {Pages }

    Abstract

    A novel mutation in the promoter region of avian uncoupling protein3 associated with feed efficiency and body composition traits in broiler chicken

    MD Niarami, AA Masoudi, RV Torshizi, P Davoodi
    Journal Paper , , {Pages }

    Abstract

    Non-surgical Iranian Traditional Medicine-Based Treatment of Chronic Refractory congenital Nasolacrimal Duct Obstruction in a Surgical Candidate (Thirteen-month-old) Infant

    Fatemeh Nejatbakhsh, Laila Shirbeigi, Ali Masoudi, Zahra Niktabe, Nematollah Masoudi
    Journal PaperTraditional and Integrative Medicine , 2019 June 25, {Pages 72-77 }

    Abstract

    Congenital or acquired obstruction is the most common anomaly of nasolacrimal duct (NLD). NLD obstruction (NLDO) is one of the most common problems in pediatric ophthalmology. Some symptoms of NLDO are seen in 6-20% of infants. NLDO creates two problems; first is disruption in the flow of tears that is due to epiphora. Another is the infection leading to stasis of fluid in the lacrimal system. Surgery is the choice treatment of chronic congenital NLDO in the refractory infants to massage and antibiotics. Dam-e is a watery discharge of eyes that has different reasons in Persian Medicine (PM). Based on the symptoms which was seen in patients with NLDO, it could be one of the subgroups of Dam-e. Conforming to Persian Medicine, residue of mater

    Non-Surgical Persian Medicine-Based Treatment of Chronic Refractory Congenital Nasolacrimal Duct Obstruction in a Surgical Candidate (Thirteen-month-old) Infant

    Fatemeh Nejatbakhsh, Laila Shirbeigi, Ali Masoudi, Zahra Niktabe, Nematollah Masoudi
    Journal PaperTraditional and Integrative Medicine , 2019 October 28, {Pages }

    Abstract

    Congenital or acquired obstruction is the most common anomaly of nasolacrimal duct (NLD). NLD obstruction (NLDO) is one of the most common problems in pediatric ophthalmology. Some symptoms of NLDO are seen in 6-20% of infants. NLDO creates two problems; first is disruption in the flow of tears that is due to epiphora. Another is the infection leading to stasis of fluid in the lacrimal system. Surgery is the choice treatment of chronic congenital NLDO in the refractory infants to massage and antibiotics. Dam-e is a watery discharge of eyes that has different reasons in Persian Medicine (PM). Based on the symptoms which was seen in patients with NLDO, it could be one of the subgroups of Dam-e. Conforming to Persian Medicine, residue of mater

    Investigating population structure and genetic diversity of some Iranian native cattle breeds using SNP markers

    Zahra Jafari, Ali Akbar Masoudi, Hossein Moradi Shahrbabak
    Journal PaperAsian-Australasian Journal of Animal Sciences , 2019 November 12, {Pages }

    Abstract

    ObjectiveReliable information about the demographics and population structure of endangered species is important for conservation strategies. In this regard, the population structure and genetic diversity of three Iranian cattle breeds were investigated.MethodsThe samples included Sarabi (n= 213), Taleshi (n= 81), and Nejdi (n= 211). They were genotyped using BovineSNP40 BeadChip. In addition, 45 Holstein (Bos taurus) and 46 Brahman (Bos indicus) out-group samples were used. Principal component analysis (PCA) and discriminant analysis of principal components (DAPC) were used to study the population structure.ResultsBased on Bayesian information criterion (BIC), the optimal number of clusters for DAPC method was obtained equal to seven. The

    Plant extract supplementation as a strategy for substituting dietary antibiotics in broiler chickens exposed to low ambient temperature

    Hassan Shirzadi, Farid Shariatmadari, Mohammad Amir Karimi Torshizi, Shaban Rahimi, Ali Akbar Masoudi, Gholamreza Zaboli, Nemat Hedayat-Evrigh
    Journal PaperArchives of Animal Nutrition , 2019 December 21, {Pages 16-Jan }

    Abstract

    The present study was conducted to investigate the effects of two plant extracts as alternatives to dietary antibiotics in broiler chickens exposed to low ambient temperature. A total of 300 one-day-old male broiler chickens were randomly assigned to four dietary treatments (5 replicate pens; 15 broiler chickens each) which consisted of starter (d 0 to 10), and grower (d 10 to 28) diets. Dietary treatments included a basal diet (negative control, NC) and three similar diets that were either supplemented with 200 mg/kg of Prosopis farcta extract (PFE), Rhus coriaria L. extract (RCE) or an antibiotic premix containing oxytetracycline (positive control, PC). In order to simulate low ambient temperature, room temperature was maintained at 32?C

    Investigating population structure and genetic diversity of some Iranian native cattle breeds using SNP markers.

    Z Jafari, AA Masoudi
    Journal Paper , , {Pages }

    Abstract

    Non-Surgical Persian Medicine-Based Treatment of Chronic Refractory Congenital Nasolacrimal Duct Obstruction in a Surgical Candidate (Thirteen-Months-Old) Infant

    F Nejatbakhsh, L Shirbeigi, A Masoudi, Z Niktabe, N Masoudi
    Journal Paper , , {Pages }

    Abstract

    Expression of microRNA's miR-10a, miR-214 and miR-29b as markers of fertility in roosters with normal and low sperm motility.

    SH Valipour, AA Masoudi, RV Torshizi
    Journal Paper , , {Pages }

    Abstract

    Usage of Green Fluorescent Protein for Tracing Prob iotic Bacteria in Alimentary Tract and Efficacy Evaluatio n of Different Probiotic Administration Methods in Br oilers

    F Hashemzadeh, Karimi Torshizi, S Rahimi, AA Masoudi
    Journal Paper , 2018 February 20, {Pages }

    Abstract

    Lactobacilli, like the other gut commensal bacteria , are well known for their use in poultry nutrition and for their probiotic propertie s. However, little is known about their interaction with the gastro-intestinal tract when a dministered in vivo . To specifically monitor the passage of lactobacilli after administe red in hatchery, Lactobacillus plantarum was transformed with the recombinant vector pLEM41 5::gfp. A total of 200 one-day old chicks (ROSS 308) were assigned to five experimental groups including the control and four in-hatchery probiotic administrati on method groups comprised of in ovo injection, oral gavage, spray, and vent lip applica tion.

    Identification of candidate genes for blood metabolites in Iranian chickens using a genome-wide association study

    A Javanrouh-Aliabad, R Vaez Torshizi, AA Masoudi, A Ehsani
    Journal PaperBritish poultry science , Volume 59 , Issue 4, 2018 July 4, {Pages 381-388 }

    Abstract

    1. In order to identify loci associated with metabolic traits, a genome-wide association study was carried out in a chicken F2 population derived from a reciprocal cross between Iranian Urmia indigenous chickens and Arian broiler line using Illumina 60K Chicken single nucleotide polymorphism (SNP) BeadChip.2. Six traits including plasma level of triglycerides (TGs), cholesterol (Chol), glucose (Glu), total protein, albumin (Alb) and globulin (Glo) were recorded. The association between the identified SNPs and metabolic traits was estimated by general linear model (GLM) and compressed mixed linear model (CMLM).3. A total of 38 SNPs were identified at the genome-wide significant and suggestive levels, of which 5 SNPs reached a 5% Bonferroni g

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